Albert Fradera Sola’s CV

Albert Fradera Sola

I consider myself both collaborative and adaptable. I am always eager to tackle new and different projects. I am very enthusiastic to always share and develop my data visualization skills as a means towards better scientific communication. I am an open-minded person and enjoy having great relationships with my colleagues.

Education

PhD Candidate in Quantitative Proteomics

JGU University

Mainz, Germany

Current - 2018

PhD thesis: Computational approaches to quantitative proteomics

M.Sc. in Omics Data Analysis

University of Vic

Barcelona, Spain

2017 - 2016

Master thesis: Soring function for finding Lolium Perenne DEGs
Erasmus + grant fellow

B.Sc. in Biochemestry

University of Barcelona

Barcelona, Spain

2016 - 2009

Bachelor thesis: NMR studies on alpha-synuclein
Erasmus + grant fellow

Research Experience

PhD Candidate

Institute of Molecular Biology

Mainz, Germany

Current - 2018

PhD candidate with Dr. Falk Butter (F.Butter@imb-mainz.de)
Publications: 1 first-author paper (in submission), 5 co-author papers

Master Student

Institute of Biological, Environmental and Rural Sciences

Aberystwyth, UK

2017

MSc student with Dr. Narcis Fernandez-Fuentes (naf4@aber.ac.uk)
Publications: 1 first-authtor paper, 1 co-author paper

Wet lab projects and related skills

Immunoprecipitation of RNA-binding proteins in S. cerevisiae

N/A

I was responsible for designing the experimental setup and generating the data for the RNA-binding protein interactome investigation.
Keywords: Yeast | Protein Immunoprecipitation | Experimental design

Mass spectrometry quantitative proteomics

N/A

I used chemical labeling (DML) and label-free mass spectrometry sample preparation protocols on several projects
Keyword: Mass spectrometry | DML | LFQ | In-gel digestion

Dry lab projects and related skills

Network-based assignment of RNA-binding proteins functionality

N/A

Function-based networks were created from quantitative proteomics data and made accessible through a shiny app.
Keywords: Network | Functional analysis | KEGG | GO | R Shiny

Temporal proteome profiling of Xenopus and Leismania species

N/A

Differential expression of proteomes was investigated at various stages
Clustering (Self Organizing Maps) and dimesionality reduction techniques (Principal Component Analysis) were applied.
Keywords: Proteome | Differential expression | SOM | PCA | Clustering

Scoring function for RNA-Seq differential expression assessment

N/A

A scoring function was developed around three RNA-Seq differential expression assessment R packages (DESeq2, edgeR, limma+voom)
Keywords: NGS | RNA-Seq | Quality control | Differential expression

ChIP-Seq characterization of a novel ATPase in T. brucei

N/A

H2A.Z deposition was investigated and visualized with genome tracks
Keywords: NGS | ChIP-Seq | Genome tracks

Publication abstract’s wordcloud

Selected Publications

Projects with Genomics Analysis

N/A

2022 | PLoS Pathogens | https://doi.org/10.1371/journal.ppat.1010514
2021 | Nature Comunications | https://doi.org/10.1038/s41467-021-22861-2
2021 | PLoS One | https://doi.org/10.1371/journal.pone.0249636
2019 | PLoS One | https://doi.org/10.1371/journal.pone.0220518

Projects with Proteomics Analysis

N/A

2021 | Journal of Cell Science | https://doi.org/10.1242/jcs.254300
2020 | RNA | https://doi.org/10.1261/rna.076281.120

Conferences and courses

Conferences

N/A

2022 | Statistical data analysis for genome-scale biology |Flash talk
2021 | Network biology |Plenary talk
2019 | FEBS advanced course |Poster presentation

Courses

N/A

2022 | Data visualization for scientists
2021 | Scientific writing
2020 | Convincing scientific presentations

Document created with the R packages pagedown and datadrivencv.

The source code is available on github.

Last updated on 2022-08-01.

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Contact

Software Skills

Language Skills

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